Variant report

Variant	rs73177964
Chromosome Location	chr12:104436695-104436696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2629806	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv427922	chr12:104325583-104523096	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104408800-104442200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr12:104424800-104438800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:104428400-104439000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:104429200-104438400	Weak transcription	Colon Smooth Muscle	Colon
5	chr12:104429600-104438800	Weak transcription	Ovary	ovary
6	chr12:104432800-104439000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr12:104435000-104442000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:104435400-104438800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr12:104435600-104436800	Strong transcription	Fetal Stomach	stomach
10	chr12:104435800-104441600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:104436000-104438800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr12:104436400-104437200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr12:104436400-104438800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr12:104436600-104436800	Enhancers	Aorta	Aorta
15	chr12:104436600-104436800	Genic enhancers	Fetal Muscle Leg	muscle
16	chr12:104436600-104439000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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