Variant report

Variant	rs7317900
Chromosome Location	chr13:111081622-111081623
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr13:111081613-111081739	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
COL4A2	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1927348	1.00[AMR][1000 genomes]
rs7338965	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2751128	chr13:111040798-111132490	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111060200-111082800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:111065200-111082800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:111068000-111107000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:111068400-111088600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:111068600-111082800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:111068600-111086800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:111070200-111108400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr13:111070400-111085400	Weak transcription	Psoas Muscle	Psoas
9	chr13:111070600-111083000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr13:111071800-111082400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:111072000-111085400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr13:111072200-111082800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:111073400-111082800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr13:111074000-111083000	Weak transcription	Spleen	Spleen
15	chr13:111074200-111083000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr13:111075400-111082200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:111075400-111082200	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:111075400-111083200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr13:111075400-111083200	Weak transcription	NHDF-Ad	bronchial
20	chr13:111076000-111082800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr13:111076200-111083200	Weak transcription	Esophagus	oesophagus
22	chr13:111076200-111084000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:111076400-111082200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr13:111076400-111083000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr13:111076600-111085000	Strong transcription	Osteobl	bone
26	chr13:111076600-111094600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:111077000-111085000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr13:111077000-111095200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr13:111077200-111095600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr13:111077400-111094800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr13:111077600-111087800	Strong transcription	HSMM	muscle
32	chr13:111078000-111083200	Strong transcription	Fetal Stomach	stomach
33	chr13:111078200-111082800	Strong transcription	Fetal Muscle Trunk	muscle
34	chr13:111078200-111090600	Weak transcription	Gastric	stomach
35	chr13:111078200-111093400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr13:111078200-111094600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr13:111078200-111095200	Weak transcription	A549	lung
38	chr13:111078200-111099000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr13:111078200-111136800	Weak transcription	Colonic Mucosa	Colon
40	chr13:111078400-111082200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr13:111078400-111082200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr13:111078400-111082200	Weak transcription	Aorta	Aorta
43	chr13:111078400-111082800	Weak transcription	NHEK	skin
44	chr13:111078400-111083000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr13:111078400-111083000	Weak transcription	Lung	lung
46	chr13:111078400-111087000	Weak transcription	Pancreas	Pancrea
47	chr13:111078400-111087800	Strong transcription	NH-A	brain
48	chr13:111078400-111093400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr13:111078800-111084200	Strong transcription	HUVEC	blood vessel
50	chr13:111078800-111085400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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