Variant report

Variant	rs7317971
Chromosome Location	chr13:40048874-40048875
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1927194	0.83[YRI][hapmap]
rs1927195	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs4941929	0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs6563711	0.85[AFR][1000 genomes]
rs7325209	0.87[AFR][1000 genomes]
rs7334279	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs912042	0.92[YRI][hapmap]
rs943565	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9532384	0.87[AFR][1000 genomes]
rs9548783	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9576826	0.92[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757529	chr13:40040036-40090742	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759933	chr13:40040036-40090742	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40037000-40051200	Weak transcription	Ovary	ovary
2	chr13:40037000-40053800	Weak transcription	Fetal Lung	lung
3	chr13:40037400-40053400	Weak transcription	Aorta	Aorta
4	chr13:40041600-40057800	Weak transcription	NHDF-Ad	bronchial
5	chr13:40043600-40068200	Weak transcription	Lung	lung
6	chr13:40046000-40058800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:40046600-40049400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:40046600-40050000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:40046800-40057800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:40048200-40049000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:40048400-40051000	Weak transcription	Fetal Heart	heart
12	chr13:40048800-40049000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr13:40048800-40049000	Enhancers	Right Atrium	heart
14	chr13:40048800-40050000	Enhancers	Left Ventricle	heart
15	chr13:40048800-40050000	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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