Variant report

Variant	rs73179831
Chromosome Location	chr2:12136584-12136585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11901995	1.00[AMR][1000 genomes]
rs16858066	1.00[AMR][1000 genomes]
rs60406176	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6723216	1.00[AMR][1000 genomes]
rs6732821	1.00[AMR][1000 genomes]
rs6736659	1.00[AMR][1000 genomes]
rs6748351	1.00[AMR][1000 genomes]
rs6748733	1.00[AMR][1000 genomes]
rs73175452	1.00[AMR][1000 genomes]
rs73175470	1.00[AMR][1000 genomes]
rs73177640	1.00[AMR][1000 genomes]
rs7568754	1.00[AMR][1000 genomes]
rs7606301	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12134000-12137000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:12134600-12137400	ZNF genes & repeats	GM12878-XiMat	blood
3	chr2:12134800-12139800	Enhancers	NHDF-Ad	bronchial
4	chr2:12135000-12137400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:12135200-12136800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:12135200-12139600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:12135200-12139800	Enhancers	HSMM	muscle
8	chr2:12135400-12137000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:12135400-12139400	Enhancers	Osteobl	bone
10	chr2:12135600-12136800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:12135600-12137200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:12135600-12137200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:12135600-12137200	Enhancers	NHEK	skin
14	chr2:12135600-12138800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr2:12135800-12138400	Weak transcription	Fetal Muscle Leg	muscle
16	chr2:12136000-12136600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:12136000-12137800	Weak transcription	HUVEC	blood vessel
18	chr2:12136000-12138600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:12136000-12138600	Weak transcription	HMEC	breast
20	chr2:12136400-12139400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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