Variant report

Variant	rs73179836
Chromosome Location	chr21:17797541-17797542
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:17795082..17798298-chr21:17801061..17804757,3	MCF-7	breast:
2	chr21:17793428..17795619-chr21:17796309..17799030,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2823793	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823800	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55810916	0.80[EUR][1000 genomes]
rs56662735	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58647744	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61441283	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73179813	0.88[EUR][1000 genomes]
rs73195911	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73195917	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8132208	0.80[EUR][1000 genomes]
rs8133984	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064857	chr21:17628760-18533131	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
2	nsv544382	chr21:17628760-18533131	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	345 gene(s)	inside rSNPs	diseases
3	nsv913416	chr21:17728224-17863882	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv913419	chr21:17775056-17826260	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv470880	chr21:17777827-17820111	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv459100	chr21:17777966-17826260	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv587077	chr21:17777966-17826260	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv913420	chr21:17777966-17826260	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv913421	chr21:17786219-17826260	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv913422	chr21:17791751-17826260	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv459101	chr21:17794432-17819036	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv587078	chr21:17794432-17819036	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17794400-17797800	Active TSS	Right Atrium	heart
2	chr21:17795000-17798200	Flanking Active TSS	HUVEC	blood vessel
3	chr21:17795400-17803200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr21:17796000-17800800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr21:17796200-17797600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
6	chr21:17796200-17797600	Flanking Active TSS	Liver	Liver
7	chr21:17796400-17797600	Active TSS	Ovary	ovary
8	chr21:17796400-17797800	Enhancers	Rectal Smooth Muscle	rectum
9	chr21:17797000-17797600	Enhancers	Osteobl	bone
10	chr21:17797000-17799200	Weak transcription	A549	lung
11	chr21:17797200-17797600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr21:17797200-17797600	Enhancers	Brain Germinal Matrix	brain
13	chr21:17797200-17797600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr21:17797200-17797600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr21:17797200-17797600	Enhancers	Brain Substantia Nigra	brain
16	chr21:17797200-17797600	Weak transcription	Left Ventricle	heart
17	chr21:17797200-17797800	Weak transcription	Fetal Kidney	kidney
18	chr21:17797200-17797800	Active TSS	Psoas Muscle	Psoas
19	chr21:17797200-17798000	Enhancers	Fetal Lung	lung
20	chr21:17797200-17798200	Enhancers	Adipose Nuclei	Adipose
21	chr21:17797200-17798200	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr21:17797200-17798400	Enhancers	Brain Anterior Caudate	brain
23	chr21:17797200-17798400	Weak transcription	Fetal Heart	heart
24	chr21:17797200-17799000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr21:17797200-17799000	Enhancers	Fetal Brain Male	brain
26	chr21:17797200-17799600	Enhancers	Hela-S3	cervix
27	chr21:17797200-17799800	Enhancers	NH-A	brain
28	chr21:17797200-17803200	Weak transcription	Colon Smooth Muscle	Colon
29	chr21:17797200-17813000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr21:17797200-17813400	Weak transcription	Fetal Muscle Leg	muscle
31	chr21:17797400-17797600	Active TSS	Fetal Brain Female	brain
32	chr21:17797400-17797800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr21:17797400-17797800	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr21:17797400-17798000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr21:17797400-17798000	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr21:17797400-17798400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr21:17797400-17800400	Weak transcription	HSMM	muscle

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