Variant report

Variant	rs73180184
Chromosome Location	chr2:11564555-11564556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58483074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181956	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181959	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181960	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181962	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181980	1.00[EUR][1000 genomes]
rs73181982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7588248	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11546600-11584200	Weak transcription	Pancreas	Pancrea
2	chr2:11560400-11584000	Weak transcription	Aorta	Aorta
3	chr2:11560600-11576800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:11561200-11571000	Weak transcription	HSMMtube	muscle
5	chr2:11561200-11579200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:11561600-11575400	Weak transcription	Fetal Heart	heart
7	chr2:11562200-11573800	Weak transcription	A549	lung
8	chr2:11562800-11582400	Weak transcription	Left Ventricle	heart
9	chr2:11563000-11583800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:11563000-11586800	Weak transcription	Psoas Muscle	Psoas
11	chr2:11563400-11581600	Weak transcription	Adipose Nuclei	Adipose
12	chr2:11564200-11580000	Weak transcription	Ovary	ovary
13	chr2:11564400-11565200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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