Variant report

Variant	rs7318277
Chromosome Location	chr13:48756113-48756114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7995331	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7997624	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9671043	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1047140	chr13:48703732-48765860	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541767	chr13:48703732-48765860	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3327569	chr13:48743550-48798094	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48749800-48760200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:48755200-48762800	Enhancers	Primary B cells from cord blood	blood
3	chr13:48755600-48756200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr13:48755600-48756200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:48755600-48756200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr13:48755600-48756400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr13:48755600-48760000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr13:48755600-48760000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr13:48755600-48760200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr13:48755800-48756200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr13:48755800-48756200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr13:48755800-48756200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:48755800-48756200	Enhancers	GM12878-XiMat	blood
14	chr13:48755800-48756200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr13:48755800-48756600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr13:48755800-48759600	Enhancers	Primary T cells from cord blood	blood
17	chr13:48755800-48760200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr13:48755800-48763000	Enhancers	Primary B cells from peripheral blood	blood
19	chr13:48756000-48756200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr13:48756000-48756200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr13:48756000-48756200	Enhancers	Fetal Thymus	thymus
22	chr13:48756000-48757400	Enhancers	Dnd41	blood
23	chr13:48756000-48757600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr13:48756000-48760000	Enhancers	Primary T cells fromperipheralblood	blood

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