Variant report

Variant	rs73182834
Chromosome Location	chr5:89390831-89390832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10055037	1.00[AMR][1000 genomes]
rs10067640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10074210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10077412	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436042	1.00[AMR][1000 genomes]
rs28552687	1.00[AMR][1000 genomes]
rs59078245	1.00[AMR][1000 genomes]
rs73182732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv917025	chr5:89208994-89855436	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	esv1803563	chr5:89385773-89395840	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89388200-89392200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:89388600-89391600	Enhancers	Rectal Smooth Muscle	rectum
3	chr5:89388600-89392200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:89388800-89393200	Enhancers	NHEK	skin
5	chr5:89389400-89391800	Enhancers	Colon Smooth Muscle	Colon
6	chr5:89389400-89392200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:89389400-89392800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr5:89389400-89392800	Enhancers	HMEC	breast
9	chr5:89389600-89391000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:89389800-89391000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:89390600-89394600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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