Variant report

Variant	rs73183243
Chromosome Location	chr5:90629321-90629322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90620993..90625952-chr5:90626297..90629321,4	K562	blood:
2	chr5:90620286..90631493-chr5:90673961..90680952,22	K562	blood:
3	chr5:90623090..90625952-chr5:90626730..90629321,3	K562	blood:
4	chr5:90626215..90629880-chr5:90669812..90672845,3	K562	blood:
5	chr5:90626594..90630452-chr5:90662107..90665248,4	K562	blood:
6	chr5:90622849..90631493-chr5:90673648..90681743,16	K562	blood:
7	chr5:90626936..90629876-chr5:90648777..90650616,2	K562	blood:
8	chr5:90626959..90631910-chr5:90674929..90677621,4	MCF-7	breast:
9	chr5:90627877..90630368-chr5:90668279..90670836,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10428652	0.93[AFR][1000 genomes]
rs34163011	1.00[AFR][1000 genomes]
rs73183239	1.00[AFR][1000 genomes]
rs73183247	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90621800-90634600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:90625200-90634800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:90625600-90635000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:90628000-90634800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:90628400-90634800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:90628600-90632200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:90628800-90634600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:90629000-90629400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:90629000-90634800	Weak transcription	Hela-S3	cervix
10	chr5:90629200-90629400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:90629200-90629600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr5:90629200-90629800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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