Variant report

Variant	rs73185401
Chromosome Location	chr3:178723562-178723563
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28698929	0.80[AMR][1000 genomes]
rs73185354	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73185398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73187212	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv461026	chr3:178661814-178886609	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv592649	chr3:178661814-178886609	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178708600-178726200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:178708800-178737800	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:178709200-178724400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:178709600-178724800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:178713200-178725000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:178716400-178755000	Weak transcription	Pancreas	Pancrea
7	chr3:178717400-178744400	Weak transcription	HMEC	breast
8	chr3:178718800-178724400	Weak transcription	NHLF	lung
9	chr3:178719200-178737600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:178719600-178724000	Weak transcription	Left Ventricle	heart
11	chr3:178719600-178733000	Weak transcription	Primary T cells from cord blood	blood
12	chr3:178720200-178725000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:178720200-178726400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:178720400-178724400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:178720400-178734200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:178720600-178737600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:178721400-178737800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:178721400-178738000	Weak transcription	Aorta	Aorta
19	chr3:178721800-178724800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:178722200-178751600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:178723000-178732000	Weak transcription	HSMM	muscle
22	chr3:178723000-178733600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:178723200-178723800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr3:178723200-178731200	Weak transcription	HSMMtube	muscle
25	chr3:178723400-178723800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:178723400-178749800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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