Variant report

Variant	rs73185873
Chromosome Location	chr3:118843354-118843355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10934484	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1347449	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs251448	0.81[ASN][1000 genomes]
rs251450	0.82[ASN][1000 genomes]
rs251451	0.82[ASN][1000 genomes]
rs251452	0.81[ASN][1000 genomes]
rs2573193	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2903301	0.83[EUR][1000 genomes]
rs4359803	0.90[EUR][1000 genomes]
rs4687839	0.89[EUR][1000 genomes]
rs55906068	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56130435	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56314227	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56317615	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58870360	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73185901	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv2756586	chr3:118688611-118863998	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv829692	chr3:118727772-118901711	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1003880	chr3:118729532-118858123	Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3392030	chr3:118840162-118843560	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118840200-118849000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:118842400-118844600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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