Variant report

Variant	rs73187677
Chromosome Location	chr2:11268173-11268174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11260529..11263397-chr2:11266491..11268422,2	K562	blood:
2	chr2:11267451..11270365-chr2:11623207..11626147,3	MCF-7	breast:
3	chr2:11261636..11264793-chr2:11267057..11269969,4	MCF-7	breast:
4	chr2:11267717..11270213-chr2:11295348..11297264,2	MCF-7	breast:
5	chr2:11266900..11270015-chr2:11270952..11273853,3	K562	blood:
6	chr2:10971180..10977465-chr2:11267266..11272931,15	MCF-7	breast:
7	chr2:11215555..11217160-chr2:11266403..11268332,2	K562	blood:

Variant related genes	Relation type
ENSG00000143870	Chromatin interaction
ENSG00000150873	Chromatin interaction
ENSG00000145063	Chromatin interaction
ENSG00000162976	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11903251	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56732337	0.98[AFR][1000 genomes]
rs60610218	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61710770	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73187671	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73187673	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73187676	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73187678	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73187679	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520789	chr2:11259067-11312224	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11262200-11269800	Weak transcription	Ovary	ovary
2	chr2:11262800-11268600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:11262800-11269600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:11263000-11268400	Weak transcription	HMEC	breast
5	chr2:11263400-11269800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:11263600-11269800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:11264600-11268600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:11264600-11269600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:11264800-11269800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:11265000-11268400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:11265000-11268400	Weak transcription	Stomach Mucosa	stomach
12	chr2:11265000-11268600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr2:11265000-11269400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr2:11265000-11269800	Weak transcription	Brain Anterior Caudate	brain
15	chr2:11265200-11269600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr2:11265200-11269800	Weak transcription	Liver	Liver
17	chr2:11265400-11268400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:11265400-11269600	Weak transcription	A549	lung
19	chr2:11266600-11268400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:11267800-11268200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:11268000-11268200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr2:11268000-11268200	Enhancers	Spleen	Spleen
23	chr2:11268000-11268800	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr2:11268000-11268800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:11268000-11269600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:11268000-11269600	Enhancers	Fetal Thymus	thymus
27	chr2:11268000-11269800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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