Variant report

Variant	rs73188422
Chromosome Location	chr3:19924283-19924284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:19923874..19927811-chr3:19988482..19992158,4	K562	blood:
2	chr3:19922897..19926980-chr3:19987408..19989481,3	MCF-7	breast:
3	chr3:19908798..19910478-chr3:19922117..19924794,2	K562	blood:

Variant related genes	Relation type
ENSG00000144566	Chromatin interaction
ENSG00000163576	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11925668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11929340	1.00[AMR][1000 genomes]
rs13317268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28886381	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4858713	0.90[AFR][1000 genomes]
rs55746682	1.00[AMR][1000 genomes]
rs55851373	1.00[AMR][1000 genomes]
rs58512353	1.00[AMR][1000 genomes]
rs61139478	0.80[AFR][1000 genomes]
rs61152961	1.00[AMR][1000 genomes]
rs73173912	1.00[AMR][1000 genomes]
rs73176006	1.00[AMR][1000 genomes]
rs73176093	1.00[AMR][1000 genomes]
rs73190456	1.00[AMR][1000 genomes]
rs73190462	1.00[AMR][1000 genomes]
rs7355793	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9834480	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9840739	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850421	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850665	0.90[AFR][1000 genomes]
rs9850795	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9854666	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9855399	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9869783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010123	chr3:18990307-19989504	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1004602	chr3:19031671-19930052	Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv536511	chr3:19031671-19930052	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv433358	chr3:19547184-19996508	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	esv1828161	chr3:19547184-20062060	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv1825914	chr3:19549859-20137270	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	esv1833006	chr3:19562271-20389045	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	esv1826570	chr3:19579860-20077414	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
9	esv1833139	chr3:19579860-20121349	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	esv1826254	chr3:19592688-20042834	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
11	nsv1003183	chr3:19671647-19948351	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:19923200-19926800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:19923400-19926800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:19923400-19926800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:19923400-19927200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:19923400-19930000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:19924200-19930200	Weak transcription	Brain Cingulate Gyrus	brain

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