Variant report
| Variant | rs73189895 |
|---|---|
| Chromosome Location | chr12:104112312-104112313 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10778281 | 0.96[ASN][1000 genomes] |
| rs10778283 | 0.96[ASN][1000 genomes] |
| rs10861078 | 1.00[ASN][1000 genomes] |
| rs10861080 | 0.93[ASN][1000 genomes] |
| rs10861081 | 0.93[ASN][1000 genomes] |
| rs10861083 | 0.96[ASN][1000 genomes] |
| rs11111733 | 0.93[ASN][1000 genomes] |
| rs11111735 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12300983 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12370734 | 0.93[ASN][1000 genomes] |
| rs12424999 | 0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12425719 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17034419 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17034433 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17034436 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2270485 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2270486 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56008435 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6539099 | 1.00[ASN][1000 genomes] |
| rs6539100 | 0.96[ASN][1000 genomes] |
| rs73189900 | 0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs73189901 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73192004 | 0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73192005 | 0.93[AMR][1000 genomes] |
| rs7975156 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899479 | chr12:104092996-104138918 | Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899480 | chr12:104092996-104211440 | Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv899481 | chr12:104092996-104213731 | Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv899482 | chr12:104092996-104218956 | Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:104111000-104113400 | Strong transcription | Spleen | Spleen |
