Variant report

Variant	rs73191095
Chromosome Location	chr2:11969087-11969088
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11964399..11966822-chr2:11968206..11970733,4	K562	blood:
2	chr2:11967833..11971284-chr2:12088713..12091572,3	K562	blood:
3	chr2:11968995..11970591-chr2:13111840..13113656,2	K562	blood:
4	chr2:11967830..11972620-chr2:11972845..11976949,6	K562	blood:
5	chr2:11967830..11971091-chr2:11972845..11976949,4	K562	blood:
6	chr2:11969083..11970013-chr2:12857769..12858306,2	K562	blood:
7	chr2:11964536..11966144-chr2:11966996..11970850,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73191099	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
4	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11946200-11969200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr2:11956200-11969400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:11956600-11969400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:11956600-11969600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:11958200-11969200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:11960400-11969400	Weak transcription	Aorta	Aorta
7	chr2:11960400-11969800	Weak transcription	Psoas Muscle	Psoas
8	chr2:11960800-11969200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr2:11960800-11969200	Weak transcription	NH-A	brain
10	chr2:11960800-11969600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:11961400-11969200	Weak transcription	Fetal Brain Male	brain
12	chr2:11961400-11969400	Weak transcription	Fetal Kidney	kidney
13	chr2:11962000-11969200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:11962200-11969600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:11963400-11969400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr2:11965000-11969200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr2:11965000-11969200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr2:11965000-11969400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:11965200-11969200	Weak transcription	Brain Angular Gyrus	brain
20	chr2:11965400-11969200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:11965400-11969200	Weak transcription	Esophagus	oesophagus
22	chr2:11965400-11969200	Weak transcription	Right Ventricle	heart
23	chr2:11965400-11969200	Weak transcription	Stomach Mucosa	stomach
24	chr2:11965400-11969200	Weak transcription	Spleen	Spleen
25	chr2:11965400-11969400	Weak transcription	Gastric	stomach
26	chr2:11965400-11969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr2:11965400-11969600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr2:11965400-11969600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr2:11965400-11969600	Weak transcription	HSMM	muscle
30	chr2:11965600-11969400	Weak transcription	Right Atrium	heart
31	chr2:11965600-11969600	Weak transcription	Colonic Mucosa	Colon
32	chr2:11965600-11969600	Weak transcription	Left Ventricle	heart
33	chr2:11965800-11969200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr2:11965800-11969200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr2:11965800-11969200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr2:11965800-11969200	Weak transcription	Osteobl	bone
37	chr2:11965800-11970400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr2:11966000-11969400	Weak transcription	Brain Germinal Matrix	brain
39	chr2:11966000-11969400	Weak transcription	Fetal Heart	heart
40	chr2:11966000-11970000	Weak transcription	Fetal Brain Female	brain
41	chr2:11966200-11969200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr2:11966200-11969600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr2:11966800-11969200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr2:11967000-11969200	Weak transcription	Fetal Stomach	stomach
45	chr2:11967000-11969200	Weak transcription	NHEK	skin
46	chr2:11967000-11969400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr2:11967000-11969400	Weak transcription	Ovary	ovary
48	chr2:11967200-11969200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr2:11967200-11969200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:11967200-11969200	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links