Variant report

Variant	rs73191708
Chromosome Location	chr13:48736838-48736839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48730879..48733755-chr13:48736482..48738295,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11616587	1.00[AFR][1000 genomes]
rs4151437	1.00[AFR][1000 genomes]
rs4151440	1.00[AFR][1000 genomes]
rs4151445	1.00[AFR][1000 genomes]
rs4151463	1.00[AFR][1000 genomes]
rs4151469	1.00[AFR][1000 genomes]
rs73191734	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1047140	chr13:48703732-48765860	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541767	chr13:48703732-48765860	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48724200-48738200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:48732400-48738000	Enhancers	Adipose Nuclei	Adipose
3	chr13:48732600-48737000	Enhancers	Primary hematopoietic stem cells	blood
4	chr13:48733800-48738800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:48734000-48739000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:48734400-48737400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr13:48734600-48737800	Weak transcription	Colon Smooth Muscle	Colon
8	chr13:48734800-48737400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr13:48735000-48738000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr13:48735200-48737000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:48735400-48737200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:48735400-48743600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr13:48735600-48738000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:48735600-48738800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr13:48735600-48739000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr13:48735800-48740600	Weak transcription	NHEK	skin
17	chr13:48735800-48740800	Weak transcription	HMEC	breast
18	chr13:48736000-48737800	Enhancers	Fetal Lung	lung
19	chr13:48736000-48739000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr13:48736000-48739600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:48736000-48739800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr13:48736200-48738800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr13:48736200-48740600	Weak transcription	Esophagus	oesophagus
24	chr13:48736600-48737000	Weak transcription	Primary B cells from cord blood	blood
25	chr13:48736800-48737000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr13:48736800-48737200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr13:48736800-48737400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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