Variant report

Variant	rs73194435
Chromosome Location	chr13:50394090-50394091
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11616762	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11617139	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17073445	0.81[ASN][1000 genomes]
rs56286086	0.88[AMR][1000 genomes]
rs6650380	0.82[AMR][1000 genomes]
rs73194405	0.88[AMR][1000 genomes]
rs73194417	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73194435	EBPL	cis	Whole Blood	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50387400-50394600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:50387400-50394800	Weak transcription	Fetal Intestine Large	intestine
3	chr13:50390000-50394800	Weak transcription	Placenta	Placenta
4	chr13:50393200-50394800	Weak transcription	Fetal Heart	heart
5	chr13:50394000-50396000	Enhancers	HepG2	liver
6	chr13:50394000-50403800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links