Variant report

Variant	rs73201609
Chromosome Location	chr13:54930816-54930817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1415195	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54928600-54931400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr13:54929000-54932000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:54929200-54931400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:54929600-54932000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:54929800-54931200	Enhancers	Adipose Nuclei	Adipose
6	chr13:54930000-54932000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:54930200-54931200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:54930200-54931400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:54930200-54931400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:54930400-54931400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr13:54930400-54931600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:54930400-54931800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr13:54930400-54931800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr13:54930400-54932600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr13:54930600-54931000	Enhancers	Stomach Mucosa	stomach
16	chr13:54930600-54931200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:54930600-54931200	Enhancers	Brain Germinal Matrix	brain
18	chr13:54930600-54931800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr13:54930600-54932000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr13:54930600-54932000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:54930600-54932400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr13:54930800-54931400	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr13:54930800-54931400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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