Variant report

Variant	rs73202581
Chromosome Location	chr5:107287205-107287206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107285811..107288026-chr5:107290020..107292465,2	K562	blood:
2	chr5:107285431..107288026-chr5:107290064..107292465,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73202567	0.83[AFR][1000 genomes]
rs73202580	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107273600-107287800	Weak transcription	Gastric	stomach
2	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
3	chr5:107283200-107294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:107284400-107289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:107284400-107290000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:107284400-107292600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:107285200-107287400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr5:107285200-107287600	Enhancers	Fetal Thymus	thymus
9	chr5:107285200-107287600	Enhancers	Thymus	Thymus
10	chr5:107285800-107288600	Enhancers	Primary T cells from cord blood	blood
11	chr5:107286000-107287800	Enhancers	Dnd41	blood
12	chr5:107286000-107290000	Weak transcription	NHDF-Ad	bronchial
13	chr5:107286600-107287400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:107286600-107287400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:107286600-107287400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr5:107286600-107287400	Strong transcription	Aorta	Aorta
17	chr5:107286600-107287400	Enhancers	Left Ventricle	heart
18	chr5:107286600-107287400	Enhancers	Lung	lung
19	chr5:107286600-107287400	Enhancers	Psoas Muscle	Psoas
20	chr5:107286600-107287400	Enhancers	Right Atrium	heart
21	chr5:107286600-107287600	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr5:107286800-107287600	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr5:107286800-107287600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr5:107286800-107291000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr5:107287200-107287400	Enhancers	Pancreas	Pancrea
26	chr5:107287200-107292000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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