Variant report

Variant	rs73204417
Chromosome Location	chr4:60106120-60106121
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73200564	1.00[AMR][1000 genomes]
rs73200570	1.00[AMR][1000 genomes]
rs73204413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73204425	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73204445	1.00[AMR][1000 genomes]
rs73204449	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011113	chr4:59647956-60263029	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879048	chr4:60053789-60512343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv998940	chr4:60095522-60132170	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60104000-60109000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:60105400-60106400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:60105400-60107000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:60105600-60106400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:60105800-60106400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:60106000-60106600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:60106000-60107000	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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