Variant report

Variant	rs7320514
Chromosome Location	chr13:50422008-50422009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:50365341..50367203-chr13:50419576..50422274,3	MCF-7	breast:
2	chr13:50223077..50223615-chr13:50421808..50422802,2	K562	blood:
3	chr13:50226990..50227524-chr13:50421888..50422595,3	K562	blood:
4	chr13:50421820..50422768-chr13:50509785..50510743,4	MCF-7	breast:
5	chr13:50226483..50227196-chr13:50421637..50422391,2	MCF-7	breast:
6	chr13:50365342..50367960-chr13:50420871..50422430,2	K562	blood:
7	chr13:50243658..50244532-chr13:50421679..50422537,5	MCF-7	breast:
8	chr13:50411667..50415006-chr13:50418421..50422258,4	K562	blood:
9	chr13:50403150..50405801-chr13:50420228..50422990,2	MCF-7	breast:
10	chr13:50420967..50423677-chr13:50509145..50511469,2	K562	blood:
11	chr13:50421554..50424015-chr13:50696890..50698594,2	K562	blood:
12	chr13:50243856..50246257-chr13:50421112..50423233,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000123178	Chromatin interaction
ENSG00000102753	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55813792	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55825121	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56079328	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61960374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61960375	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61960379	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61961517	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322027	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322028	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986486	0.92[EUR][1000 genomes]
rs9591310	0.81[CEU][hapmap]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50421800-50422200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr13:50421800-50422200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
3	chr13:50421800-50422200	Active TSS	H9 Cell Line	embryonic stem cell
4	chr13:50421800-50422200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:50421800-50422200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:50421800-50422200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr13:50421800-50422200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr13:50421800-50422200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
9	chr13:50421800-50422200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:50421800-50422200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr13:50421800-50422200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:50421800-50422200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:50421800-50422200	Enhancers	Fetal Heart	heart
14	chr13:50421800-50422200	Enhancers	Fetal Lung	lung
15	chr13:50421800-50422200	Enhancers	Ovary	ovary
16	chr13:50421800-50422200	Enhancers	Pancreas	Pancrea
17	chr13:50421800-50422200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
18	chr13:50421800-50422200	Flanking Bivalent TSS/Enh	Dnd41	blood
19	chr13:50421800-50422400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:50421800-50422400	Bivalent/Poised TSS	Fetal Kidney	kidney
21	chr13:50421800-50422400	Flanking Active TSS	Placenta	Placenta
22	chr13:50421800-50422400	Active TSS	A549	lung
23	chr13:50421800-50422400	Active TSS	Hela-S3	cervix
24	chr13:50421800-50422400	Active TSS	NHEK	skin
25	chr13:50421800-50422600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:50421800-50422600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
27	chr13:50421800-50422600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:50421800-50422600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr13:50421800-50422600	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr13:50421800-50422600	Active TSS	Primary hematopoietic stem cells	blood
31	chr13:50421800-50422600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr13:50421800-50422600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr13:50421800-50422600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr13:50421800-50422600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr13:50421800-50422600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:50421800-50422600	Enhancers	Aorta	Aorta
37	chr13:50421800-50422600	Enhancers	Liver	Liver
38	chr13:50421800-50422600	Bivalent Enhancer	Fetal Muscle Leg	muscle
39	chr13:50421800-50422600	Active TSS	HSMM	muscle
40	chr13:50421800-50422600	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr13:50421800-50422600	Active TSS	NHLF	lung
42	chr13:50422000-50422200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr13:50422000-50422200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr13:50422000-50422200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr13:50422000-50422200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr13:50422000-50422200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr13:50422000-50422200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr13:50422000-50422200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr13:50422000-50422200	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
50	chr13:50422000-50422200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links