Variant report

Variant	rs7320559
Chromosome Location	chr13:84661162-84661163
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11840488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11840522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7317145	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101062	1.00[AMR][1000 genomes]
rs8000935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050457	chr13:84540846-84676790	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv562554	chr13:84547284-84662368	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1047488	chr13:84629304-84696148	Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1050242	chr13:84633380-84661162	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv826732	chr13:84656285-84665033	ZNF genes & repeats Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84660200-84661800	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr13:84660200-84661800	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr13:84660400-84661200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:84660400-84661200	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr13:84660400-84661200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:84660400-84661200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
7	chr13:84660400-84661200	Active TSS	Pancreas	Pancrea
8	chr13:84660400-84661200	Active TSS	Right Ventricle	heart
9	chr13:84660400-84661200	Active TSS	Stomach Smooth Muscle	stomach
10	chr13:84660400-84661200	Active TSS	Thymus	Thymus
11	chr13:84660400-84661400	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr13:84660400-84661800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr13:84660600-84661200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr13:84660600-84661800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:84660600-84662000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr13:84660800-84661200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:84661000-84661400	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr13:84661000-84661400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:84661000-84661400	Active TSS	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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