Variant report

Variant	rs73206544
Chromosome Location	chr5:107364060-107364061
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10075175	1.00[AMR][1000 genomes]
rs10076561	1.00[AMR][1000 genomes]
rs10078557	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10080074	1.00[AMR][1000 genomes]
rs1529804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3435266	chr5:107362345-107373452	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3469699	chr5:107362374-107373448	Weak transcription Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3469701	chr5:107362374-107373448	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3469700	chr5:107362376-107373479	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107339200-107364200	Weak transcription	Left Ventricle	heart
2	chr5:107339600-107364200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:107339600-107373800	Weak transcription	Primary T cells from cord blood	blood
4	chr5:107344000-107364200	Weak transcription	Psoas Muscle	Psoas
5	chr5:107352800-107364200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:107360800-107364200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:107361000-107364200	Weak transcription	Pancreas	Pancrea
8	chr5:107361000-107369800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:107361200-107368000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:107361600-107364200	Weak transcription	Right Atrium	heart
11	chr5:107361600-107369200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:107363600-107364600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:107363800-107364600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:107363800-107364800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:107363800-107365200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:107364000-107364400	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr5:107364000-107364600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:107364000-107364600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:107364000-107365000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr5:107364000-107365200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr5:107364000-107365200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:107364000-107390000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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