Variant report
| Variant | rs73207053 |
|---|---|
| Chromosome Location | chr4:59845448-59845449 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr4:59845424-59845907 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000251339 | TF binding region |
| ENSG00000251266 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs60541604 | 1.00[AMR][1000 genomes] |
| rs73192878 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73192949 | 1.00[AMR][1000 genomes] |
| rs73194830 | 1.00[AMR][1000 genomes] |
| rs73194845 | 1.00[AMR][1000 genomes] |
| rs73194846 | 1.00[AMR][1000 genomes] |
| rs73194867 | 1.00[AMR][1000 genomes] |
| rs73195259 | 1.00[AMR][1000 genomes] |
| rs73205203 | 1.00[AMR][1000 genomes] |
| rs73207075 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73207080 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73207081 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7692502 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879031 | chr4:59434110-59915131 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | esv3446251 | chr4:59622409-59949840 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1011113 | chr4:59647956-60263029 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 4 | esv2752957 | chr4:59655302-59923634 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 5 | nsv1000048 | chr4:59709475-59889707 | ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
