Variant report

Variant	rs7320723
Chromosome Location	chr13:97929154-97929155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97872309..97876314-chr13:97928603..97932246,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2389823	0.90[GIH][hapmap]
rs7321962	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516895	0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7320723	TEX10	trans	parietal	SCAN

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97910600-97935000	Weak transcription	Colonic Mucosa	Colon
2	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
3	chr13:97919000-97935000	Weak transcription	Gastric	stomach
4	chr13:97920000-97931200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:97920200-97930800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:97920400-97932200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:97921400-97932800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:97921400-97934800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr13:97921600-97932800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr13:97922000-97929200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:97922000-97930200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:97922000-97932200	Weak transcription	Thymus	Thymus
13	chr13:97922000-97933200	Weak transcription	Spleen	Spleen
14	chr13:97924000-97929200	Weak transcription	Right Ventricle	heart
15	chr13:97924800-97936200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:97925200-97929600	Enhancers	Fetal Intestine Small	intestine
17	chr13:97925200-97936400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:97925400-97929600	Enhancers	Fetal Stomach	stomach
19	chr13:97925400-97933000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr13:97925600-97931000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr13:97925600-97935600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr13:97925800-97932200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr13:97925800-97936600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr13:97926000-97933000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr13:97926200-97929200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr13:97926800-97930000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr13:97926800-97932200	Weak transcription	Esophagus	oesophagus
29	chr13:97926800-97932800	Weak transcription	Pancreas	Pancrea
30	chr13:97926800-97932800	Weak transcription	Right Atrium	heart
31	chr13:97926800-97935000	Weak transcription	Lung	lung
32	chr13:97927000-97929600	Strong transcription	K562	blood
33	chr13:97927200-97929200	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr13:97927200-97929600	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr13:97927200-97930200	Strong transcription	Primary B cells from cord blood	blood
36	chr13:97927600-97929600	Strong transcription	Primary hematopoietic stem cells	blood
37	chr13:97927600-97929800	Enhancers	Stomach Smooth Muscle	stomach
38	chr13:97927800-97929400	Strong transcription	Primary T cells from cord blood	blood
39	chr13:97927800-97929600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr13:97927800-97929600	Genic enhancers	Primary B cells from peripheral blood	blood
41	chr13:97927800-97929800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr13:97927800-97929800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr13:97927800-97929800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr13:97927800-97929800	Genic enhancers	Brain Inferior Temporal Lobe	brain
45	chr13:97927800-97929800	Strong transcription	Fetal Thymus	thymus
46	chr13:97927800-97931000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr13:97927800-97931800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr13:97928000-97929200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr13:97928000-97929200	Strong transcription	Placenta	Placenta
50	chr13:97928000-97929200	Enhancers	GM12878-XiMat	blood

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