Variant report

Variant	rs7321063
Chromosome Location	chr13:50519277-50519278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1086510	0.93[AMR][1000 genomes]
rs1241386	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2252794	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2472595	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2740536	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2760916	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2760917	0.93[AMR][1000 genomes]
rs706607	0.86[AMR][1000 genomes]
rs706612	0.86[AMR][1000 genomes]
rs790936	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs790938	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs790946	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1834429	chr13:50509784-50536186	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv1837591	chr13:50513148-50530603	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50511400-50537800	Weak transcription	Left Ventricle	heart
2	chr13:50513400-50532600	Weak transcription	Ovary	ovary
3	chr13:50513400-50532800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links