Variant report

Variant	rs73213470
Chromosome Location	chr7:119899995-119899996
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10488284	1.00[AFR][1000 genomes]
rs17593342	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73213468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213478	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608326	chr7:119828331-119995890	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119897400-119901400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:119897600-119901400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:119898200-119903800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:119898200-119906600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:119898400-119907600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:119899600-119900200	Enhancers	HSMMtube	muscle
7	chr7:119899600-119900400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:119899600-119900400	Enhancers	HSMM	muscle
9	chr7:119899800-119900200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:119899800-119900200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr7:119899800-119900400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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