Variant report

Variant	rs73213841
Chromosome Location	chr21:39782532-39782533
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39781906..39784178-chr21:39784704..39786909,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs35819020	1.00[ASN][1000 genomes]
rs61428957	1.00[ASN][1000 genomes]
rs715860	1.00[ASN][1000 genomes]
rs7278432	1.00[ASN][1000 genomes]
rs8134349	1.00[ASN][1000 genomes]
rs8134689	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058886	chr21:39341560-39799638	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv834098	chr21:39691898-39845254	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39770600-39796200	Weak transcription	Gastric	stomach
2	chr21:39772400-39794000	Weak transcription	Fetal Stomach	stomach
3	chr21:39772600-39803000	Weak transcription	Adipose Nuclei	Adipose
4	chr21:39776600-39788000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr21:39777000-39786200	Strong transcription	Primary hematopoietic stem cells	blood
6	chr21:39777000-39795200	Weak transcription	Lung	lung
7	chr21:39778000-39784800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr21:39779000-39782600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr21:39780400-39784800	Weak transcription	Aorta	Aorta
10	chr21:39780400-39798800	Weak transcription	Ovary	ovary
11	chr21:39780600-39783000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr21:39780600-39788000	Weak transcription	Spleen	Spleen
13	chr21:39780800-39784000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr21:39780800-39796200	Weak transcription	Right Ventricle	heart
15	chr21:39781000-39807400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr21:39781400-39783400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr21:39781600-39783200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr21:39781800-39782600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr21:39781800-39782800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr21:39781800-39783000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr21:39782000-39783000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr21:39782200-39783200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr21:39782400-39783200	Strong transcription	HUVEC	blood vessel

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