Variant report

Variant	rs73214068
Chromosome Location	chr4:7961970-7961971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7953204..7956072-chr4:7960320..7962500,2	MCF-7	breast:
2	chr4:7961563..7964655-chr4:7964819..7967108,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73214058	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv593621	chr4:7943106-7969594	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv829851	chr4:7958698-8049060	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7951400-7962200	Weak transcription	Small Intestine	intestine
2	chr4:7957000-7962000	Enhancers	Hela-S3	cervix
3	chr4:7958000-7962400	Enhancers	A549	lung
4	chr4:7958400-7962000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:7958400-7962000	Weak transcription	Right Ventricle	heart
6	chr4:7958600-7962000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:7958600-7962000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:7958600-7962000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:7958600-7962000	Weak transcription	Brain Anterior Caudate	brain
10	chr4:7958600-7962000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:7958600-7962400	Weak transcription	Brain Substantia Nigra	brain
12	chr4:7958600-7964600	Weak transcription	Gastric	stomach
13	chr4:7958800-7962000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:7958800-7962000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:7958800-7962600	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:7959000-7962000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:7959000-7962400	Weak transcription	Fetal Kidney	kidney
18	chr4:7959000-7963000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:7959200-7962000	Weak transcription	Fetal Lung	lung
20	chr4:7959400-7962000	Weak transcription	Colonic Mucosa	Colon
21	chr4:7959400-7962000	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:7959400-7971600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:7959600-7962000	Weak transcription	Fetal Intestine Small	intestine
24	chr4:7960000-7962000	Enhancers	Rectal Smooth Muscle	rectum
25	chr4:7960000-7963800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:7960200-7962400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr4:7960200-7962400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:7960600-7962600	Enhancers	Colon Smooth Muscle	Colon
29	chr4:7960600-7962800	Enhancers	Spleen	Spleen
30	chr4:7960600-7963600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:7960600-7964800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr4:7960800-7962600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:7960800-7962800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:7960800-7963400	Enhancers	Placenta	Placenta
35	chr4:7960800-7963800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:7961000-7962000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr4:7961000-7962000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:7961000-7962000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr4:7961000-7962000	Enhancers	Stomach Smooth Muscle	stomach
40	chr4:7961000-7962200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr4:7961000-7962400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr4:7961000-7962600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr4:7961000-7962800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr4:7961000-7962800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr4:7961000-7964400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr4:7961200-7962400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr4:7961200-7962800	Weak transcription	Fetal Intestine Large	intestine
48	chr4:7961200-7963600	Enhancers	Fetal Stomach	stomach
49	chr4:7961400-7962400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr4:7961400-7962600	Weak transcription	H1 Cell Line	embryonic stem cell

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