Variant report

Variant	rs73214693
Chromosome Location	chr4:7588084-7588085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7587235..7591067-chr4:7593146..7595528,3	K562	blood:
2	chr4:7195456..7197409-chr4:7586904..7589269,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11931772	1.00[AMR][1000 genomes]
rs12171489	1.00[AMR][1000 genomes]
rs28577242	1.00[AMR][1000 genomes]
rs28579975	1.00[AMR][1000 genomes]
rs57016470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57598978	0.85[EUR][1000 genomes]
rs57717198	1.00[AMR][1000 genomes]
rs73082839	1.00[AMR][1000 genomes]
rs73099737	1.00[AMR][1000 genomes]
rs73214645	0.85[EUR][1000 genomes]
rs73214659	0.85[EUR][1000 genomes]
rs73214660	0.85[EUR][1000 genomes]
rs73214676	0.93[EUR][1000 genomes]
rs73214682	0.93[EUR][1000 genomes]
rs73214683	0.93[EUR][1000 genomes]
rs73214685	0.93[EUR][1000 genomes]
rs73214689	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73214691	0.93[EUR][1000 genomes]
rs73216605	1.00[EUR][1000 genomes]
rs73216611	1.00[EUR][1000 genomes]
rs73216616	0.93[EUR][1000 genomes]
rs73216624	0.86[EUR][1000 genomes]
rs73216626	0.86[EUR][1000 genomes]
rs73216630	0.86[EUR][1000 genomes]
rs73216631	0.86[EUR][1000 genomes]
rs73797030	1.00[AMR][1000 genomes]
rs73797035	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv461212	chr4:7572718-7620195	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv593617	chr4:7572718-7620195	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv461213	chr4:7584560-7637297	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv593618	chr4:7584560-7637297	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7586000-7588200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr4:7586600-7592000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:7586800-7591600	Weak transcription	Fetal Brain Female	brain
4	chr4:7587400-7591000	Weak transcription	Fetal Brain Male	brain
5	chr4:7588000-7588800	Weak transcription	Brain Germinal Matrix	brain
6	chr4:7588000-7590200	Weak transcription	Ovary	ovary

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