Variant report

Variant	rs73216306
Chromosome Location	chr4:62169766-62169767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1505680	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17090431	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6826967	1.00[AMR][1000 genomes]
rs73216313	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73216328	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7698359	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:62162200-62171400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:62164200-62171200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:62165400-62169800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:62166400-62171400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:62167000-62170600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:62168000-62170400	Weak transcription	Fetal Brain Male	brain
8	chr4:62168400-62170400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:62168800-62170400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:62169000-62170000	Enhancers	Brain Angular Gyrus	brain
11	chr4:62169200-62169800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:62169600-62169800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:62169600-62170000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:62169600-62170000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:62169600-62170000	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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