Variant report

Variant	rs7321657
Chromosome Location	chr13:69816717-69816718
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs1119006	0.82[EUR][1000 genomes]
rs1119008	0.82[EUR][1000 genomes]
rs11840452	1.00[JPT][hapmap]
rs1358983	0.82[EUR][1000 genomes]
rs1446381	0.82[EUR][1000 genomes]
rs1584205	0.82[EUR][1000 genomes]
rs1584206	0.82[EUR][1000 genomes]
rs1584207	0.82[EUR][1000 genomes]
rs1584208	0.81[EUR][1000 genomes]
rs1596875	0.82[EUR][1000 genomes]
rs17662037	0.82[EUR][1000 genomes]
rs17663302	1.00[CHB][hapmap]
rs1816912	0.82[EUR][1000 genomes]
rs1823107	0.82[EUR][1000 genomes]
rs1823108	0.82[EUR][1000 genomes]
rs1838811	0.82[EUR][1000 genomes]
rs1855898	0.82[EUR][1000 genomes]
rs1953606	0.82[EUR][1000 genomes]
rs2050543	0.82[EUR][1000 genomes]
rs2100060	0.82[EUR][1000 genomes]
rs2100061	0.82[EUR][1000 genomes]
rs2100062	0.82[EUR][1000 genomes]
rs2121292	0.82[EUR][1000 genomes]
rs2325185	0.82[EUR][1000 genomes]
rs2325186	0.82[EUR][1000 genomes]
rs2325187	0.82[EUR][1000 genomes]
rs2325188	0.90[CEU][hapmap];1.00[CHB][hapmap];0.84[GIH][hapmap];0.82[EUR][1000 genomes]
rs2325189	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs4265699	0.82[EUR][1000 genomes]
rs4332643	0.82[EUR][1000 genomes]
rs4566032	0.82[EUR][1000 genomes]
rs4594137	0.82[EUR][1000 genomes]
rs4635209	0.82[EUR][1000 genomes]
rs4644747	0.82[EUR][1000 genomes]
rs4883842	0.82[EUR][1000 genomes]
rs4884839	0.82[EUR][1000 genomes]
rs6562565	0.82[EUR][1000 genomes]
rs6562567	0.82[EUR][1000 genomes]
rs6562568	0.82[EUR][1000 genomes]
rs6562569	0.82[EUR][1000 genomes]
rs6562570	0.81[EUR][1000 genomes]
rs6562573	0.82[EUR][1000 genomes]
rs6562577	0.82[EUR][1000 genomes]
rs6562578	0.82[EUR][1000 genomes]
rs7318385	0.82[EUR][1000 genomes]
rs7319519	0.82[EUR][1000 genomes]
rs73202110	0.82[EUR][1000 genomes]
rs73202111	0.82[EUR][1000 genomes]
rs7320680	0.82[EUR][1000 genomes]
rs7328973	0.82[EUR][1000 genomes]
rs7335577	0.82[EUR][1000 genomes]
rs7336164	0.82[EUR][1000 genomes]
rs7337220	0.82[EUR][1000 genomes]
rs7999472	0.82[EUR][1000 genomes]
rs895461	0.82[EUR][1000 genomes]
rs921058	0.82[EUR][1000 genomes]
rs921060	0.82[EUR][1000 genomes]
rs9317790	0.82[EUR][1000 genomes]
rs9317794	0.82[EUR][1000 genomes]
rs9317795	0.82[EUR][1000 genomes]
rs9317796	0.81[EUR][1000 genomes]
rs9317808	1.00[CHB][hapmap]
rs9317809	1.00[CHB][hapmap]
rs9529553	0.82[EUR][1000 genomes]
rs9529555	0.82[EUR][1000 genomes]
rs9541838	0.90[CEU][hapmap]
rs9541839	0.82[EUR][1000 genomes]
rs9541840	0.82[EUR][1000 genomes]
rs9541843	0.82[EUR][1000 genomes]
rs9541844	0.82[EUR][1000 genomes]
rs9541845	0.82[EUR][1000 genomes]
rs9541846	0.82[EUR][1000 genomes]
rs9541847	0.82[EUR][1000 genomes]
rs9541851	0.82[EUR][1000 genomes]
rs9541891	1.00[CHB][hapmap]
rs9541892	1.00[CHB][hapmap]
rs9541893	1.00[CHB][hapmap]
rs9541894	1.00[CHB][hapmap]
rs9541895	1.00[CHB][hapmap]
rs9541896	1.00[CHB][hapmap]
rs9564556	0.82[EUR][1000 genomes]
rs9572130	0.82[EUR][1000 genomes]
rs9572132	0.82[EUR][1000 genomes]
rs9592635	1.00[CHB][hapmap]
rs9599450	1.00[CHB][hapmap]
rs9599451	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3525265	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3525266	chr13:69794000-69846365	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7321657	ACTR6	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69813200-69821800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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