Variant report

Variant	rs73216798
Chromosome Location	chr4:31047046-31047047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6448735	0.84[AFR][1000 genomes]
rs6816605	0.82[AFR][1000 genomes]
rs6821606	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6830043	1.00[ASN][1000 genomes]
rs73216795	1.00[ASN][1000 genomes]
rs73216799	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216801	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216802	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696255	0.87[AFR][1000 genomes]
rs9991482	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31043200-31050600	Weak transcription	Psoas Muscle	Psoas
2	chr4:31043800-31050000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:31043800-31052800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:31044400-31047200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:31045800-31047400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:31046000-31047800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:31046000-31049800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:31046000-31052800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:31046400-31047400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:31046400-31047600	Enhancers	Fetal Heart	heart
11	chr4:31046600-31047200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:31046800-31047400	Enhancers	Stomach Mucosa	stomach
13	chr4:31046800-31047600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:31046800-31047600	Enhancers	Hela-S3	cervix
15	chr4:31047000-31047200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:31047000-31047200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr4:31047000-31047200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:31047000-31047400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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