Variant report

Variant	rs73216834
Chromosome Location	chr4:30464003-30464004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1512153	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1512154	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73216835	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73216840	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73216841	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73216857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73216858	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73216860	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73216872	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73216882	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73216887	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73216888	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73228250	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73228257	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73228258	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73228259	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73228260	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461315	chr4:30348053-30658535	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593898	chr4:30348053-30658535	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878805	chr4:30385756-30473099	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv878806	chr4:30432141-30508931	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv878807	chr4:30437096-30508931	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30462000-30464200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:30463600-30464400	ZNF genes & repeats	GM12878-XiMat	blood
3	chr4:30464000-30464200	Flanking Active TSS	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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