Variant report

Variant	rs7321774
Chromosome Location	chr13:37556999-37557000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:37555396..37557070-chr13:37570309..37573495,3	MCF-7	breast:
2	chr13:37555502..37557441-chr13:37560771..37563958,3	K562	blood:
3	chr13:37429778..37432394-chr13:37555605..37558202,2	MCF-7	breast:
4	chr13:37556904..37559060-chr13:37572018..37574128,2	K562	blood:
5	chr13:37555533..37557211-chr13:37565179..37569543,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120697	Chromatin interaction
ENSG00000120699	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9547711	0.82[YRI][hapmap]
rs9547713	0.82[YRI][hapmap]
rs9603126	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv522336	chr13:37305641-37584838	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37519600-37561400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:37520600-37560800	Weak transcription	Small Intestine	intestine
3	chr13:37523200-37558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:37524000-37563800	Weak transcription	Psoas Muscle	Psoas
5	chr13:37524600-37572400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:37525000-37560800	Weak transcription	Fetal Heart	heart
7	chr13:37526800-37559400	Weak transcription	Hela-S3	cervix
8	chr13:37529400-37558200	Weak transcription	Gastric	stomach
9	chr13:37531800-37570000	Strong transcription	Dnd41	blood
10	chr13:37539000-37558400	Weak transcription	Colonic Mucosa	Colon
11	chr13:37539000-37561000	Weak transcription	Aorta	Aorta
12	chr13:37539200-37558000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:37539400-37561000	Weak transcription	Right Ventricle	heart
14	chr13:37539400-37562400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr13:37539600-37558200	Weak transcription	Brain Germinal Matrix	brain
16	chr13:37539600-37562400	Weak transcription	Fetal Brain Male	brain
17	chr13:37539800-37557600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr13:37540200-37558800	Weak transcription	Fetal Kidney	kidney
19	chr13:37540200-37561400	Weak transcription	Esophagus	oesophagus
20	chr13:37540200-37562200	Weak transcription	K562	blood
21	chr13:37540400-37558400	Weak transcription	Brain Substantia Nigra	brain
22	chr13:37541000-37558600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr13:37543200-37558400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr13:37545600-37561200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr13:37545800-37557000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr13:37545800-37558400	Weak transcription	Spleen	Spleen
27	chr13:37547400-37570000	Strong transcription	Fetal Thymus	thymus
28	chr13:37547800-37559800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr13:37547800-37570200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr13:37549000-37569400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr13:37549400-37558400	Weak transcription	Pancreas	Pancrea
32	chr13:37549600-37559400	Strong transcription	Fetal Intestine Large	intestine
33	chr13:37549800-37558400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr13:37550000-37557000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr13:37550000-37561200	Weak transcription	A549	lung
36	chr13:37550000-37563800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr13:37550000-37565400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr13:37550200-37557200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr13:37550200-37557200	Weak transcription	Brain Anterior Caudate	brain
40	chr13:37550400-37557600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr13:37550400-37557800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr13:37550400-37570200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr13:37550600-37570400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:37551600-37557600	Weak transcription	Thymus	Thymus
45	chr13:37551600-37558200	Weak transcription	Ovary	ovary
46	chr13:37551600-37565000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:37551800-37557000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr13:37552200-37570000	Strong transcription	Fetal Muscle Trunk	muscle
49	chr13:37552400-37557000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr13:37552400-37570000	Strong transcription	Primary T cells from cord blood	blood

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