Variant report

Variant	rs73217899
Chromosome Location	chr3:110111037-110111038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:110101594..110103351-chr3:110109665..110111945,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4376065	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv460819	chr3:110080893-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877336	chr3:110083045-110143891	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv470838	chr3:110083045-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv591273	chr3:110087264-110194026	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877337	chr3:110091627-110186611	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv999414	chr3:110103126-110340180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110108600-110111200	Enhancers	HUVEC	blood vessel
2	chr3:110108800-110111400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:110109000-110111200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:110109400-110111400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:110109800-110111400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:110109800-110111400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:110110000-110111200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr3:110110000-110111400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:110110000-110111400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:110110600-110111400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:110110600-110111400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:110110600-110111400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:110110600-110111400	Enhancers	Osteobl	bone
14	chr3:110110800-110111400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:110110800-110111400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:110110800-110111400	Enhancers	NH-A	brain
17	chr3:110111000-110111200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:110111000-110111400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:110111000-110111400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:110111000-110111400	Enhancers	Hela-S3	cervix
21	chr3:110111000-110111400	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links