Variant report

Variant	rs7321847
Chromosome Location	chr13:49165374-49165375
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1323551	1.00[EUR][1000 genomes]
rs17069281	1.00[EUR][1000 genomes]
rs17071673	1.00[EUR][1000 genomes]
rs17071675	1.00[EUR][1000 genomes]
rs17071714	1.00[EUR][1000 genomes]
rs17071716	1.00[EUR][1000 genomes]
rs3092883	1.00[EUR][1000 genomes]
rs3901587	1.00[EUR][1000 genomes]
rs41425345	1.00[EUR][1000 genomes]
rs4151514	1.00[EUR][1000 genomes]
rs4151516	1.00[EUR][1000 genomes]
rs4151527	1.00[EUR][1000 genomes]
rs4151563	1.00[EUR][1000 genomes]
rs4151587	1.00[EUR][1000 genomes]
rs4151621	1.00[EUR][1000 genomes]
rs4151628	1.00[EUR][1000 genomes]
rs4303378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58318754	1.00[EUR][1000 genomes]
rs59355608	1.00[EUR][1000 genomes]
rs6561463	1.00[EUR][1000 genomes]
rs6561467	1.00[EUR][1000 genomes]
rs7316991	1.00[EUR][1000 genomes]
rs7323517	1.00[EUR][1000 genomes]
rs7324752	1.00[EUR][1000 genomes]
rs7325924	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7329733	1.00[EUR][1000 genomes]
rs7333561	1.00[EUR][1000 genomes]
rs7336389	1.00[EUR][1000 genomes]
rs73490880	1.00[EUR][1000 genomes]
rs73493099	1.00[EUR][1000 genomes]
rs7981750	1.00[EUR][1000 genomes]
rs7984036	1.00[EUR][1000 genomes]
rs7984309	1.00[EUR][1000 genomes]
rs7997794	1.00[EUR][1000 genomes]
rs9331954	1.00[EUR][1000 genomes]
rs9332019	1.00[EUR][1000 genomes]
rs9332048	1.00[EUR][1000 genomes]
rs9332086	1.00[EUR][1000 genomes]
rs943282	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv455881	chr13:49134412-49169570	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv561591	chr13:49134412-49169570	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49160000-49166000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr13:49160200-49166200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:49161000-49169600	Weak transcription	HSMM	muscle
4	chr13:49161200-49165400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr13:49161200-49167400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:49161200-49167400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:49161400-49169600	Weak transcription	Right Atrium	heart
8	chr13:49161400-49176400	Weak transcription	Right Ventricle	heart
9	chr13:49163000-49167000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:49163200-49166600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr13:49163600-49165600	Enhancers	GM12878-XiMat	blood
12	chr13:49163600-49167400	Enhancers	Fetal Intestine Large	intestine
13	chr13:49163800-49168200	Enhancers	Fetal Intestine Small	intestine
14	chr13:49163800-49170800	Enhancers	Stomach Mucosa	stomach
15	chr13:49164000-49165400	Enhancers	Placenta	Placenta
16	chr13:49164000-49169800	Enhancers	HepG2	liver
17	chr13:49164200-49165400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr13:49164200-49165400	Enhancers	HSMMtube	muscle
19	chr13:49164400-49165400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr13:49164600-49165400	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr13:49164600-49166200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:49164800-49165400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr13:49164800-49165400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr13:49164800-49165400	Enhancers	Gastric	stomach
25	chr13:49164800-49165400	Enhancers	Pancreas	Pancrea
26	chr13:49164800-49165600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:49164800-49166600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr13:49165000-49165400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr13:49165000-49165400	Enhancers	Fetal Muscle Trunk	muscle
30	chr13:49165000-49165600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
31	chr13:49165000-49165600	Enhancers	Hela-S3	cervix
32	chr13:49165000-49169600	Weak transcription	Fetal Muscle Leg	muscle
33	chr13:49165000-49169600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr13:49165200-49165600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr13:49165200-49169600	Weak transcription	Left Ventricle	heart
36	chr13:49165200-49169600	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links