Variant report
| Variant | rs73218564 |
|---|---|
| Chromosome Location | chr5:107787308-107787309 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:107716163..107719153-chr5:107784681..107787772,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145743 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1078831 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17161191 | 1.00[AMR][1000 genomes] |
| rs17161195 | 1.00[AMR][1000 genomes] |
| rs4457056 | 1.00[AMR][1000 genomes] |
| rs56943053 | 1.00[AMR][1000 genomes] |
| rs73214546 | 1.00[AMR][1000 genomes] |
| rs73214547 | 1.00[AMR][1000 genomes] |
| rs73214553 | 1.00[AMR][1000 genomes] |
| rs73214561 | 1.00[AMR][1000 genomes] |
| rs73214567 | 1.00[AMR][1000 genomes] |
| rs73214578 | 1.00[AMR][1000 genomes] |
| rs73216333 | 1.00[AMR][1000 genomes] |
| rs73216337 | 1.00[AMR][1000 genomes] |
| rs73218544 | 1.00[AMR][1000 genomes] |
| rs888750 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
