Variant report

Variant	rs73221958
Chromosome Location	chr13:76044249-76044250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76043336..76044935-chr13:76055375..76057132,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136111	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17257170	0.95[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4883999	0.97[AFR][1000 genomes]
rs56266917	0.95[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7318664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7320071	0.82[ASN][1000 genomes]
rs7321791	0.82[ASN][1000 genomes]
rs73221960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335576	0.97[AFR][1000 genomes]
rs9573554	0.90[AFR][1000 genomes]
rs9573555	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76020400-76054400	Weak transcription	A549	lung
2	chr13:76028400-76054800	Weak transcription	Esophagus	oesophagus
3	chr13:76031800-76053400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr13:76033400-76045600	Weak transcription	Fetal Muscle Leg	muscle
5	chr13:76035200-76045600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:76039400-76052000	Weak transcription	Right Ventricle	heart
7	chr13:76039600-76053600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:76039800-76044400	Weak transcription	Right Atrium	heart
9	chr13:76039800-76054200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:76040200-76054800	Weak transcription	Pancreas	Pancrea
11	chr13:76040400-76044600	Enhancers	HepG2	liver
12	chr13:76041400-76045200	Enhancers	Fetal Heart	heart
13	chr13:76042400-76052000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr13:76042600-76047600	Weak transcription	HSMMtube	muscle
15	chr13:76042800-76046000	Enhancers	Left Ventricle	heart
16	chr13:76042800-76047600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:76043000-76047000	Weak transcription	Fetal Lung	lung
18	chr13:76043000-76051800	Weak transcription	Liver	Liver
19	chr13:76043000-76053000	Weak transcription	NHDF-Ad	bronchial
20	chr13:76043200-76044400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr13:76043200-76047400	Enhancers	Psoas Muscle	Psoas
22	chr13:76043400-76046600	Weak transcription	Adipose Nuclei	Adipose
23	chr13:76043600-76044400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr13:76043600-76044800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr13:76043600-76045000	Weak transcription	GM12878-XiMat	blood
26	chr13:76043600-76053600	Weak transcription	Hela-S3	cervix
27	chr13:76043800-76053600	Weak transcription	NHEK	skin
28	chr13:76044000-76044400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr13:76044000-76044800	Weak transcription	Ovary	ovary

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