Variant report

Variant	rs73222243
Chromosome Location	chr3:135933746-135933747
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10222451	0.81[EUR][1000 genomes]
rs13068210	0.89[EUR][1000 genomes]
rs13081671	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13321220	0.83[EUR][1000 genomes]
rs28519617	0.81[EUR][1000 genomes]
rs28535121	0.83[EUR][1000 genomes]
rs28669017	0.81[EUR][1000 genomes]
rs35320690	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35352346	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3905668	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56398805	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6439629	0.88[EUR][1000 genomes]
rs6769762	0.88[EUR][1000 genomes]
rs6786582	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135930800-135934200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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