Variant report

Variant	rs7322393
Chromosome Location	chr13:89362284-89362285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1326421	0.88[AMR][1000 genomes]
rs1326422	0.88[AMR][1000 genomes]
rs1326423	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1326439	0.90[ASN][1000 genomes]
rs1326444	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1409452	0.88[AMR][1000 genomes]
rs1409454	0.84[AMR][1000 genomes]
rs1536352	0.90[ASN][1000 genomes]
rs1853978	0.83[ASN][1000 genomes]
rs1926478	0.88[ASN][1000 genomes]
rs1952189	0.88[AMR][1000 genomes]
rs2026570	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2038934	0.84[AMR][1000 genomes]
rs2038935	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2225048	0.84[AMR][1000 genomes]
rs3933260	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4293239	0.99[ASN][1000 genomes]
rs4310726	0.90[ASN][1000 genomes]
rs4310727	0.99[ASN][1000 genomes]
rs4447288	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4547212	0.84[AMR][1000 genomes]
rs7322016	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7335014	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7983924	0.81[AMR][1000 genomes]
rs7987540	0.84[AMR][1000 genomes]
rs8000708	0.84[AMR][1000 genomes]
rs8000777	0.81[AMR][1000 genomes]
rs8002705	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9301420	0.84[AMR][1000 genomes]
rs9301421	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9515129	0.84[AMR][1000 genomes]
rs9521558	0.84[AMR][1000 genomes]
rs9521561	0.84[AMR][1000 genomes]
rs9521889	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9521892	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900816	chr13:89224649-89392881	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1043206	chr13:89296779-89417347	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv900817	chr13:89302824-89386602	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900818	chr13:89302824-89392881	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900819	chr13:89302824-89405660	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900820	chr13:89302824-89686507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900821	chr13:89302824-89941209	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv471167	chr13:89305650-89393187	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1037296	chr13:89355045-89461651	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89357400-89362600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:89360400-89362600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links