Variant report

Variant	rs732255
Chromosome Location	chr3:56016672-56016673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12487286	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379715	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1379717	0.92[EUR][1000 genomes]
rs3736506	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3817370	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6773433	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6782638	0.91[EUR][1000 genomes]
rs7620775	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7628577	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7650821	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1009709	chr3:56000827-56294945	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3438970	chr3:56016394-56016684	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs732255	ERC2	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56003800-56017000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:56003800-56023000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:56013200-56022200	Weak transcription	Pancreas	Pancrea
4	chr3:56015800-56020400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:56015800-56020600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:56016600-56017800	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links