Variant report

Variant	rs73226665
Chromosome Location	chr7:127861526-127861527
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RBM28-2	chr7:127861457-127861593	XLOC_006597

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10954172	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11767595	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095188	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv33413	chr7:127800064-127929303	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv5945	chr7:127852004-127880768	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv429811	chr7:127857891-127889049	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127844000-127875600	Weak transcription	Right Atrium	heart
2	chr7:127850000-127867400	Weak transcription	Spleen	Spleen
3	chr7:127856000-127863600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:127857400-127862200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:127858000-127861800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:127858400-127861800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:127858800-127861600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:127858800-127861600	Weak transcription	Adipose Nuclei	Adipose
9	chr7:127858800-127861600	Weak transcription	Osteobl	bone
10	chr7:127859600-127861600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:127859600-127861800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr7:127859800-127862600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:127860400-127861600	Weak transcription	HSMM	muscle
14	chr7:127860600-127861600	Weak transcription	HSMMtube	muscle
15	chr7:127860800-127862400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:127860800-127863400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:127861200-127861800	Enhancers	Hela-S3	cervix
18	chr7:127861400-127861800	Enhancers	NHDF-Ad	bronchial
19	chr7:127861400-127862000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:127861400-127862200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
21	chr7:127861400-127862400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
22	chr7:127861400-127862600	Enhancers	Placenta	Placenta
23	chr7:127861400-127863200	Enhancers	NHLF	lung
24	chr7:127861400-127863400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:127861400-127863400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr7:127861400-127863400	Enhancers	HMEC	breast
27	chr7:127861400-127863400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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