Variant report

Variant	rs73226959
Chromosome Location	chr3:139905688-139905689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17342111	1.00[AFR][1000 genomes]
rs56183794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73226963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73226966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73226968	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73226970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73226971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73226973	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73226977	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998423	chr3:139526446-139947336	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829739	chr3:139797496-140002685	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139900000-139905800	Weak transcription	Esophagus	oesophagus
2	chr3:139901600-139915000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:139902800-139907400	Enhancers	Fetal Muscle Leg	muscle
4	chr3:139903000-139905800	Weak transcription	Aorta	Aorta
5	chr3:139903400-139907600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr3:139903600-139908000	Enhancers	Fetal Heart	heart
7	chr3:139904400-139906400	Enhancers	Fetal Stomach	stomach
8	chr3:139904400-139906800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:139904400-139906800	Enhancers	Colon Smooth Muscle	Colon
10	chr3:139904400-139907000	Enhancers	Brain Hippocampus Middle	brain
11	chr3:139904600-139906000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:139904600-139906200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:139904600-139906200	Enhancers	HSMM	muscle
14	chr3:139904600-139906200	Enhancers	NH-A	brain
15	chr3:139904600-139906200	Enhancers	Osteobl	bone
16	chr3:139904600-139906400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr3:139904600-139906400	Enhancers	Stomach Smooth Muscle	stomach
18	chr3:139904600-139906400	Enhancers	HSMMtube	muscle
19	chr3:139904800-139905800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:139904800-139905800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr3:139904800-139905800	Weak transcription	Left Ventricle	heart
22	chr3:139904800-139905800	Weak transcription	Pancreas	Pancrea
23	chr3:139904800-139905800	Weak transcription	Psoas Muscle	Psoas
24	chr3:139904800-139905800	Weak transcription	Right Atrium	heart
25	chr3:139904800-139905800	Weak transcription	Right Ventricle	heart
26	chr3:139904800-139906000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:139904800-139906200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr3:139904800-139906200	Enhancers	Rectal Smooth Muscle	rectum
29	chr3:139904800-139906400	Enhancers	Brain Angular Gyrus	brain
30	chr3:139904800-139906400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr3:139904800-139907200	Enhancers	Brain Substantia Nigra	brain
32	chr3:139905000-139905800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:139905000-139908000	Enhancers	Brain Germinal Matrix	brain
34	chr3:139905200-139906400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:139905200-139908000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr3:139905400-139905800	Weak transcription	Ovary	ovary
37	chr3:139905400-139906400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr3:139905600-139906400	Enhancers	Brain Cingulate Gyrus	brain

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