Variant report

Variant	rs7322736
Chromosome Location	chr13:111094728-111094729
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:111084219..111086647-chr13:111094030..111095986,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1018643	0.80[YRI][hapmap];0.85[AMR][1000 genomes]
rs1018644	0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4773185	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7489705	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2751128	chr13:111040798-111132490	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv901008	chr13:111089573-111126501	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:111068000-111107000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:111070200-111108400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr13:111077000-111095200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:111077200-111095600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr13:111077400-111094800	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:111078200-111095200	Weak transcription	A549	lung
7	chr13:111078200-111099000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:111078200-111136800	Weak transcription	Colonic Mucosa	Colon
9	chr13:111079200-111097600	Weak transcription	Fetal Brain Female	brain
10	chr13:111080600-111095800	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr13:111081800-111096600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr13:111083600-111095200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:111083600-111095400	Weak transcription	Brain Hippocampus Middle	brain
14	chr13:111083600-111110000	Weak transcription	Esophagus	oesophagus
15	chr13:111084200-111106400	Weak transcription	Liver	Liver
16	chr13:111084400-111100000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr13:111084800-111098800	Strong transcription	Fetal Stomach	stomach
18	chr13:111086000-111095400	Weak transcription	Right Atrium	heart
19	chr13:111086000-111105800	Strong transcription	Adipose Nuclei	Adipose
20	chr13:111086200-111094800	Strong transcription	Muscle Satellite Cultured Cells	--
21	chr13:111086200-111095200	Strong transcription	Stomach Smooth Muscle	stomach
22	chr13:111087200-111095000	Strong transcription	Colon Smooth Muscle	Colon
23	chr13:111087200-111095400	Weak transcription	Fetal Brain Male	brain
24	chr13:111087400-111099400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr13:111087400-111099600	Weak transcription	Pancreas	Pancrea
26	chr13:111088000-111107800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr13:111088600-111095400	Strong transcription	Right Ventricle	heart
28	chr13:111089000-111094800	Weak transcription	HMEC	breast
29	chr13:111089200-111094800	Strong transcription	Osteobl	bone
30	chr13:111089400-111100000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr13:111089800-111095200	Strong transcription	Fetal Muscle Leg	muscle
32	chr13:111089800-111096000	Strong transcription	Fetal Muscle Trunk	muscle
33	chr13:111090600-111094800	Strong transcription	Aorta	Aorta
34	chr13:111090600-111094800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr13:111091000-111098200	Weak transcription	Gastric	stomach
36	chr13:111091000-111108400	Weak transcription	Brain Angular Gyrus	brain
37	chr13:111091200-111095400	Weak transcription	Small Intestine	intestine
38	chr13:111091600-111094800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:111092400-111095200	Weak transcription	NHEK	skin
40	chr13:111092400-111098400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr13:111092600-111095200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr13:111092600-111099400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr13:111092600-111099400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr13:111092800-111095200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr13:111093000-111094800	Genic enhancers	Placenta	Placenta
46	chr13:111093000-111096400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr13:111093600-111094800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr13:111093600-111094800	Weak transcription	Fetal Heart	heart
49	chr13:111093600-111097000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr13:111093600-111098200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links