Variant report

Variant	rs73227912
Chromosome Location	chr12:122027658-122027659
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:122017945..122023539-chr12:122025012..122028731,5	K562	blood:
2	chr12:121993318..121995830-chr12:122027448..122029552,2	K562	blood:
3	chr12:122027393..122030554-chr12:122096277..122098532,3	K562	blood:

Variant related genes	Relation type
ENSG00000089094	Chromatin interaction
ENSG00000256742	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28378998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28397246	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28489288	0.84[AMR][1000 genomes]
rs28508138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28517331	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28546504	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28552516	0.82[AMR][1000 genomes]
rs28594507	0.84[AMR][1000 genomes]
rs73227906	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053272	chr12:121956483-122132477	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122020200-122027800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr12:122020600-122027800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:122020600-122028400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:122020600-122030200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:122020800-122027800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr12:122020800-122040400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:122021000-122027800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr12:122021000-122027800	Weak transcription	Fetal Intestine Small	intestine
9	chr12:122021000-122027800	Weak transcription	Fetal Stomach	stomach
10	chr12:122021000-122027800	Weak transcription	NHDF-Ad	bronchial
11	chr12:122021200-122027800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr12:122021200-122027800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr12:122021200-122027800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr12:122021200-122027800	Weak transcription	Osteobl	bone
15	chr12:122021200-122028200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:122021200-122028400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:122021200-122028400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr12:122021200-122028400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr12:122021200-122028400	Weak transcription	Aorta	Aorta
20	chr12:122021200-122036000	Weak transcription	Brain Germinal Matrix	brain
21	chr12:122021400-122027800	Weak transcription	HepG2	liver
22	chr12:122021600-122033000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr12:122022000-122028400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr12:122022200-122027800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:122022200-122028200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr12:122022200-122028200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr12:122022200-122028400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr12:122022200-122028400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:122022200-122028600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:122022400-122028400	Weak transcription	Fetal Heart	heart
31	chr12:122024000-122028400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr12:122024200-122028200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr12:122024400-122028200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:122024400-122028400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr12:122024400-122028400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr12:122025000-122027800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr12:122025000-122028200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr12:122025400-122028200	Weak transcription	HSMM	muscle
39	chr12:122025400-122028400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr12:122026200-122027800	Enhancers	Primary B cells from peripheral blood	blood
41	chr12:122026200-122027800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr12:122026400-122027800	Weak transcription	HUVEC	blood vessel
43	chr12:122026800-122027800	Enhancers	Primary B cells from cord blood	blood
44	chr12:122027200-122027800	Enhancers	Fetal Thymus	thymus
45	chr12:122027200-122028200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr12:122027400-122027800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr12:122027400-122028000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
48	chr12:122027400-122028400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr12:122027600-122027800	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr12:122027600-122027800	Flanking Active TSS	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links