Variant report

Variant	rs73229105
Chromosome Location	chr3:110801871-110801872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2169644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55761850	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73227102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110792600-110802200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:110792600-110803600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:110794200-110802200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:110794200-110809200	Weak transcription	Fetal Brain Male	brain
5	chr3:110794400-110813600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:110794800-110804600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:110794800-110805200	Enhancers	Dnd41	blood
8	chr3:110796000-110804600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:110796200-110806800	Weak transcription	Small Intestine	intestine
10	chr3:110796600-110803600	Weak transcription	HepG2	liver
11	chr3:110798800-110803600	Weak transcription	Fetal Intestine Large	intestine
12	chr3:110799000-110807000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:110799000-110807000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:110799400-110802000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:110799800-110820600	Weak transcription	A549	lung
16	chr3:110800000-110802600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:110800000-110803200	Weak transcription	Fetal Intestine Small	intestine
18	chr3:110800000-110803600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:110800000-110804200	Weak transcription	Stomach Mucosa	stomach
20	chr3:110800200-110803800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:110800200-110812400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr3:110800200-110817200	Weak transcription	Gastric	stomach
23	chr3:110800400-110803800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr3:110800400-110804200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr3:110800600-110803400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:110800600-110803800	Weak transcription	Osteobl	bone
27	chr3:110800800-110803600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:110800800-110803800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr3:110800800-110804400	Weak transcription	Colon Smooth Muscle	Colon
30	chr3:110801000-110803800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:110801000-110803800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:110801000-110804200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr3:110801000-110804600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:110801200-110802000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr3:110801200-110802200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr3:110801200-110802200	Weak transcription	NHDF-Ad	bronchial
37	chr3:110801200-110803400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr3:110801200-110803800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr3:110801200-110803800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:110801200-110804400	Weak transcription	Fetal Lung	lung
41	chr3:110801600-110802800	Enhancers	Ovary	ovary
42	chr3:110801800-110802000	Enhancers	Liver	Liver
43	chr3:110801800-110802400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:110801800-110802400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:110801800-110804600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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