Variant report

Variant	rs73230160
Chromosome Location	chr3:111375091-111375092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17281311	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17423232	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17488681	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17488841	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73228199	0.86[AMR][1000 genomes]
rs73230104	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73230106	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73230108	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73230114	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73230118	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73230122	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73230126	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73230140	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73230146	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73230153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73230168	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111366000-111377000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:111372200-111378400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:111372200-111378600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:111372200-111380600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:111372400-111380400	Weak transcription	Fetal Thymus	thymus
6	chr3:111373200-111380000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:111373400-111379400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:111373400-111379800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:111373600-111379200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:111373600-111379800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr3:111373600-111380000	Weak transcription	Thymus	Thymus
12	chr3:111373800-111378800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:111374000-111379800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:111374000-111385200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:111374200-111378600	Weak transcription	Dnd41	blood
16	chr3:111374600-111376200	Weak transcription	Primary T cells from cord blood	blood
17	chr3:111374600-111378800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:111374600-111380000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:111374800-111379000	Weak transcription	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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