Variant report

Variant	rs73232940
Chromosome Location	chr3:140979756-140979757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:140979092..140980745-chr3:141007999..141010139,2	K562	blood:
2	chr3:140977766..140980226-chr3:141006718..141009392,2	MCF-7	breast:
3	chr3:140975814..140978503-chr3:140979443..140982221,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241400	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16851316	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55928634	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55964533	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56153047	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56357034	0.86[ASN][1000 genomes]
rs6779015	0.86[ASN][1000 genomes]
rs6786620	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73232936	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73232946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73232948	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73232956	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73232960	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv877551	chr3:140970556-141029860	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140955200-140980600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr3:140955400-140985800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:140957400-141001000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:140959200-140998400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:140960000-140980000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:140961200-140985800	Weak transcription	Adipose Nuclei	Adipose
7	chr3:140961200-141012600	Weak transcription	Aorta	Aorta
8	chr3:140961400-140983200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:140962000-140985800	Weak transcription	Brain Anterior Caudate	brain
10	chr3:140962600-140980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:140963400-140982800	Weak transcription	Brain Germinal Matrix	brain
12	chr3:140966000-140990200	Weak transcription	Psoas Muscle	Psoas
13	chr3:140968200-140990000	Weak transcription	Gastric	stomach
14	chr3:140968400-140982800	Weak transcription	Fetal Lung	lung
15	chr3:140974800-140985800	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:140974800-140987400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:140974800-140991400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:140975000-140979800	Weak transcription	Brain Substantia Nigra	brain
19	chr3:140975000-140984800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:140975000-140985800	Weak transcription	Right Atrium	heart
21	chr3:140975000-140993400	Weak transcription	Lung	lung
22	chr3:140975000-140993400	Weak transcription	Spleen	Spleen
23	chr3:140975200-140980600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:140975200-140984400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:140975200-140984800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:140975200-140985000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:140975200-140991800	Weak transcription	Placenta	Placenta
28	chr3:140975400-140980000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr3:140975400-140980600	Weak transcription	HSMM	muscle
30	chr3:140975400-140983400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:140975400-140990200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr3:140975800-140979800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:140975800-140980000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr3:140975800-140983600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr3:140975800-140993200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr3:140976000-140983600	Weak transcription	Fetal Brain Female	brain
37	chr3:140976400-140987200	Weak transcription	Fetal Brain Male	brain
38	chr3:140976600-140985800	Weak transcription	Fetal Heart	heart
39	chr3:140977000-140980000	Genic enhancers	Thymus	Thymus
40	chr3:140977200-140980000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr3:140977200-140985200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr3:140977400-140979800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr3:140977800-140979800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:140977800-140983200	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr3:140977800-140990000	Weak transcription	Liver	Liver
46	chr3:140978000-140985600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr3:140978000-140998000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr3:140978200-140980000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr3:140978200-140993600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr3:140978400-140979800	Strong transcription	Primary T cells from cord blood	blood

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