Variant report

Variant	rs73233904
Chromosome Location	chr14:46517666-46517667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:46517458..46517985-chr14:47049934..47050581,2	MCF-7	breast:
2	chr14:46517075..46517958-chr14:46813262..46814074,4	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10483591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1160792	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17116728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17116844	1.00[EUR][1000 genomes]
rs17116879	1.00[EUR][1000 genomes]
rs56837580	1.00[EUR][1000 genomes]
rs58201423	1.00[EUR][1000 genomes]
rs60870116	1.00[EUR][1000 genomes]
rs7143854	1.00[EUR][1000 genomes]
rs7155563	1.00[EUR][1000 genomes]
rs7160946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73232284	1.00[EUR][1000 genomes]
rs73233909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73233911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73233914	1.00[EUR][1000 genomes]
rs73233919	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73233936	1.00[EUR][1000 genomes]
rs73236339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73239582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73239584	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73239593	1.00[EUR][1000 genomes]
rs73239596	1.00[EUR][1000 genomes]
rs73239599	1.00[EUR][1000 genomes]
rs73241603	1.00[EUR][1000 genomes]
rs73250126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901847	chr14:45797782-46607899	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv564730	chr14:46122141-46729024	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3504661	chr14:46340901-46586259	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3504662	chr14:46340901-46586259	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3443622	chr14:46356082-46529198	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv901855	chr14:46361884-46548312	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv516946	chr14:46361884-46653871	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2761344	chr14:46428083-46698317	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv901858	chr14:46435899-46653871	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv456286	chr14:46458696-46572492	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv564733	chr14:46458696-46572492	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv470643	chr14:46458696-46624379	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv564734	chr14:46463839-46536631	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv456287	chr14:46463839-46559671	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv564735	chr14:46463839-46559671	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1041984	chr14:46465887-46562926	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1044718	chr14:46465887-46568503	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1041129	chr14:46466415-46562926	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv431003	chr14:46467831-46583668	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv1036267	chr14:46491828-46804734	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv3341909	chr14:46493251-46528418	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	esv3445680	chr14:46498251-46528418	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	nsv901859	chr14:46504122-46698056	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv470644	chr14:46504122-46799990	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:46516600-46518000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:46517000-46517800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:46517000-46517800	Enhancers	NHEK	skin
4	chr14:46517200-46518000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:46517200-46518000	Enhancers	HMEC	breast
6	chr14:46517200-46518400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:46517400-46518000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:46517400-46518000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:46517400-46518000	Enhancers	NH-A	brain
10	chr14:46517400-46518200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:46517600-46518000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:46517600-46518000	Enhancers	HUVEC	blood vessel
13	chr14:46517600-46518200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr14:46517600-46518200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:46517600-46518200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr14:46517600-46518200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr14:46517600-46518600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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